Automated structure report and manuscript preparation using AUTOPUBLISH

Technology

Annotation & Function

Summary

AUTOPUBLISH is a comprehensive web server that automatically annotates protein sequences and structures and prepares manuscript drafts in the style of a short structure reports like those published in Acta Crystallographica, Section F.

Description

AUTOPUBLISH is a comprehensive web server that automatically annotates protein sequences and structures and prepares manuscript drafts of short structure reports for Publication in Acta Crystallographica F or other journals that publish these types of reports. AUTOPUBLISH performs sequence annotations, database searches, conservation analysis, structure mapping of conservation residues, searches for related structures and preparation of various structure images. Additionally AUTOPUBLISH downloads and extracts the relevant content of mmCIF files into tables and raw text that conforms to crystallographic standards. AUTOPUBLISH is available online (http://ogre.aecom.yu.edu/autopublish-cgi/index.cgi) and was used to prepare a successful publication in Acta Crystallographica, Section F (Zhan et al., 2005).

Publication

Zhan C, Fedorov EV, Shi W, Ramagopal UA, Thirumuruhan R, Manjasetty BA, Almo SC, Fiser A, Chance MR, Fedorov AA. "The ybeY protein from Escherichia coli is a metalloprotein." Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Comm. 61, 959-63 (2005). PubMed ID: 16511207 | Search SBKB Publications portal | PMC Link

Contact

Andras Fiser; afiser@aecom.yu.edu

New York Structural Genomics Research Consortium

Link




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Last edited:Wed 01 Jun 2011 - 5 years, 11 months ago